Journal of Comparative Neurology

Cephalopod arms are controlled by a distributed peripheral nervous system comprising the axial nerve cord (ANC), subacetabular ganglia associated with each sucker, four longitudinal intramuscular nerve cords (INCs) embedded within the arm musculature and oblique connectives (OCs) running between INCs. Despite their prominent anatomical position and proposed roles in local sensorimotor integration and inter-arm coordination, the INCs remain poorly characterized with respect to cell-type composition and molecular identity. Here, we report the first integrative characterization of INC structure and composition in Octopus bocki by combining serial block-face scanning electron microscopy (SBEM) with multiplexed hybridization chain reaction (HCR) in situ labeling. We show that oral and aboral INCs share a consistent internal organization comprising distinct cell body regions, a peripheral tract layer, and a central synaptic zone. Both oral and aboral cords contain morphologically diverse cell populations, including abundant bipolar neurons with long unbranched processes and a second class of neurons with highly branched processes bearing bouton-like enlargements. On the molecular level, the sampled INCs are enriched for glutamatergic and buccalin-positive cells, and express abundant glia-associated transcripts. In contrast to the ANC, cholinergic, dopaminergic, serotonergic, and octopaminergic markers were not detected above background. We also characterize the relationship between the INCs and adjacent oblique connectives (OCs), showing that these structures run in close proximity but remain physically separate within the sampled high-resolution volume, with no shared fibers or crossing processes detected across the observed boundary. Together, these data establish a cellular and molecular framework for the INCs and clarify their relationship to neighboring peripheral pathways.

The human brainstem is a complex division of the brain comprised of more than 200 nuclei and fiber tracts. The brainstem is essential for the functioning of the entire body. We introduce here the most detailed human brainstem Atlas across the human lifespan: fetus, child, adult. ANCHOR, the Atlas of Neurochemical Characterization of the Human Brainstem, is an online platform that includes more than 800 serial histological sections, stained for Nissl and seven immunochemical (IHC) markers, from the human brainstem of three ages: 25 fetal gestational weeks (GW), 9 years old, and 54 years old. This makes ANCHOR the most comprehensive human brainstem Atlas to date. In these three brainstems, we identified and manually annotated over 200 structures. We further characterized these structures with the seven IHC markers. We specifically describe the catecholaminergic groups in the human brainstem across all three age groups. In addition, we identified the protoplasmic commissural dendrites of the hypoglossal nucleus and we describe the pretectal nuclei in the Nissl-stained fetal 25 GW brainstem. ANCHOR includes an online viewer that integrates multimodal data, from magnetic resonance imaging and block face imaging to Nissl- and IHC-stained serial sections and 3D reconstruction of the entire brainstem. For the 9-year-old specimen, the online viewer allows simultaneous navigation of annotated sections with corresponding IHC, for viewing the specific region-wise cellular features accessible at https://anchor.humanbrain.in/.

Neuronal circuits in the olfactory bulb (OB) perform computations fundamental to pattern classification including a decorrelation and normalization of odor-evoked activity. These computations are mediated by diverse interneurons but a comprehensive picture of interneuron types and their microcircuit organization is lacking. We provide a deep anatomical classification of neuron types and their synaptic connectivity in the OB of adult zebrafish, a well-established model to analyze olfactory computations. We reconstructed 459 neurons in an image volume acquired by serial block face scanning electron microscopy and defined 13 neuron classes based on morphological and ultrastructural features. These comprised two classes of projection neurons and 11 interneuron classes, some of which were further separated into subclasses. Ultrastructural information including spine shape, variations in neurite diameter and synaptic arrangements contributed significantly to the distinction of cell types. As in other species, reciprocal synaptic connections were abundant. Targeted synapse annotation revealed systematic connectivity between projection neurons and interneurons. These included microcircuit motifs combining reciprocal and unidirectional connectivity that provide possible structural substrates for gain control and lateral inhibition. The results provide detailed insights into the structural organization of the OB and an anatomical foundation for physiological and computational studies of information processing in olfaction.

Processing rapid motion while maintaining high spatial acuity is a fundamental evolutionary challenge for the vertebrate visual system. Here, we investigated the structural adaptations enabling aerial insectivores - swifts (Apus apus) and swallows (Hirundo rustica, Delichon urbicum) - to track and capture prey at high speeds. We show that these phylogenetically distinct species share highly specialized temporal foveae that provide sharp frontal vision. Strikingly, this avian specialization converges on primate foveal architecture, featuring cones with long axons and a unique cluster of large, orthotopic ganglion cells (soma area [≥] 200 {micro}m{superscript 2}) surrounding a deep foveal pit. By tracking their large axons, we mapped their neural representation within the optic nerve and tectum. Despite the low abundance of these foveal cells, their substantial tectal magnification reflects high processing demands. This cluster of putative motion-sensitive ganglion cells suggests that foveal neural circuitry links high-acuity vision to rapid temporal processing in these birds.

Siphonophores are colonial hydrozoans with unprecedented differentiation and specialization, in which individual zooids are transformed into functional organs rather than autonomous polyps capable of feeding. As a result, the entire colony acts as a single, modular-individual with the highest level of coordination and integration, from development through behavior. Deciphering these integrative mechanisms requires understanding the microanatomical organization of the nervous system in all elements of the colony. Here, using two immunohistochemical markers (anti-tubulin and anti-RFamide antibodies), we systematically characterize the neural systems across the entire Nanomia colony, encompassing pneumatophore, stem and all zooid classes (nectophores, gastrozooids, palpons, male and female gonophores, and protective zooids). The use of two neuronal markers enables visualization of distinct neural subpopulations, some of which are not revealed by a single marker. We provide evidence of neuroanatomical interactions within all elements of the colony, including contributions of giant axons, stem polygonal networks, and RFamide-ir neural rings at the base of each zooid, as well as describe different subpopulations of neural networks in the body of various zooids. The presented mapping facilitates identification of novel conductive and signaling pathways for future analysis of the cellular basis of behavioral integration within decentralized, broadly distributed networks and non-neuronal elements of these unique superorganisms.

Understanding how neural circuits transform sensory and bodily signals into motivational states and adaptive behavior is a central problem in neuroscience. In teleost fish, the dorsomedial telencephalon (Dm) is a key pallial region implicated in both sensory processing and aversive behavior, yet whether these functions arise from a functionally uniform region or from interactions among specialized pallial domains has remained unknown. Here we show that the teleost dorsomedial telencephalon exhibits a previously unrecognized functional organization in which distinct but interconnected pallial domains perform complementary computations that progressively transform multimodal sensory and bodily representations into aversive motivational value and adaptive behavioral control. Wide-field voltage-sensitive dye imaging revealed that tactile, auditory, and gustatory stimuli evoke spatially organized, modality-specific activity exclusively within the caudal subdivision of Dm (Dmc), whereas the rostral subdivision (Dmr) showed little or no sensory responsiveness. In contrast, focal intracerebral microstimulation demonstrated that activation of Dmr, but not Dmc, is sufficient to generate robust, flexible, and reversible conditioned place avoidance, identifying Dmr as a pallial node causally involved in the assignment of negative motivational value. Anatomical tracing revealed a circuit in which sensory and bodily-related inputs converge onto Dmc, are relayed intrapallially to Dmr, where they are transformed into an aversive motivational signal before being conveyed to hypothalamic and brainstem centers involved in autonomic and behavioral regulation. Immunohistochemical analyses confirmed the pallial identity of both subdivisions and their distinct rostrocaudal organization, while providing no evidence that Dm corresponds to a classical pallial amygdaloid territory. This functional architecture more closely resembles the distributed organization of mammalian corticolimbic networks than either a unitary pallial amygdala or a neocortical sensory hierarchy, suggesting that the transformation of sensory and bodily representations into motivational control may represent a conserved organizational feature of the pallium that emerged early during vertebrate evolution. Short abstract / Significance statementThis study shows that the teleost dorsomedial pallium is organized into complementary functional domains that dissociate multimodal sensory representation from negative motivational processing while forming an interconnected pallial circuit associated with adaptive behavioral control. Our findings reveal a distributed pallial organization resembling mammalian corticolimbic architectures and provide a new framework for understanding the evolution of vertebrate pallial function.

The lateral septum (LS) integrates afferents from multiple brain regions, including the raphe nuclei. The organization of these inputs contributes to the regionalization of LS functions, for example spatial coding in dorsal LS and emotional regulation in ventral LS. Raphe-LS projections include glutamatergic axons expressing the vesicular glutamate transporter type 3 (VGLUT3), which often form pericellular baskets around LS neurons. This study provides an anatomical characterization of the organization and origins of VGLUT3-positive (VGLUT3+) raphe inputs to the LS. We mapped VGLUT3+ axon terminal density across the rostro-caudal extent of the LS and quantified colocalization with serotonin (5-HT) using immunohistochemistry. Our results showed that VGLUT3 density was highest in the ventral LS, whereas VGLUT3/5-HT colocalization was strongest in the dorsal LS. Retrograde viral vector-mediated tracing identified predominant inputs from the median raphe and B9 neuron group. Interestingly, the ventral hippocampus, a functionally related region which is known to also receive raphe VGLUT3 inputs, showed collaterals with the LS. Additional VGLUT3+ inputs to the LS arose from the interpeduncular nucleus, bed nucleus of the stria terminalis, nucleus incertus and pontine central gray. Anterograde tracing revealed that inputs from these brain regions target distinct and largely non-overlapping domains in the LS. Our findings highlight multiple sources of VGLUT3+ inputs to the LS, beyond the raphe nuclei, and suggest that distinct VGLUT3 circuits could contribute to LS functional specialization.

Postnatal brain growth is non-linear, making precise stereotaxic targeting in the developing rat neocortex difficult without age-specific knowledge of cortical area locations. Traditional atlases visualize brain slices in the coronal plane, which can obscure top-down areal boundaries and sub-domains. To address these shortcomings, we created a developmental stereotaxic atlas that maps the neocortex of postnatal day (P) 8, P12, P16, and P20 in Sprague-Dawley and Long-Evans rats onto a coordinate grid. After using a stereotaxic device to create a grid of fluorescent probes, we extracted the brain, flattened neocortical tissue, and stained it for cytochrome oxidase, which is predominantly found in layer IV of primary cortical areas. Reconstructions of the primary somatosensory, auditory, and visual cortices demonstrate high structural reproducibility within each age and strain group. Our atlas captures the location of primary cortical areas at these 4 ages, showing that neocortical expansion is non-isometric, expanding preferentially along the rostral-caudal axis. Finally, we complement these top-down maps by extracting local neocortical surface angles from an existing coronal atlas, enabling proper electrode orientation to be tangential to the developing neocortex. Ultimately, this anatomically verified resource provides a standardized blueprint that eliminates resource-intensive trial-and-error mapping and maximizes experimental reproducibility in developmental systems neuroscience. Significance StatementTargeting specific neocortical areas in developing rats is uniquely challenging because non-linear brain expansion renders scaled adult coordinates inaccurate, while traditional coronal sections obscure top-down areal boundaries. To resolve this, we established a top-down stereotaxic atlas that maps primary sensory cortices onto flattened, cytochrome oxidase-stained tissue across early postnatal development (P8-P20) in both Sprague-Dawley and Long-Evans rats. By combining equidistant coordinate grids with empirical cortical surface angles, this resource provides an accurate, reproducible surgical blueprint. This reference tool eliminates trial-and-error coordinate mapping, reduces animal waste, and maximizes experimental precision for the developmental neuroscience community.

Sensory systems share common circuit organization motifs across mammalian species, however, anatomical subdivisions show varying degrees of complexity depending on ecological niche and species-specific sensory requirements. While coarse neuroanatomical connections seem preserved within the visual system, it remains unknown if molecularly defined cell-types share a similar degree of conservation, regarding not only their functional properties but also connectivity. Here we analyze the organization, molecular marker expression, and connections between two prominent visual centers, the superior colliculus (SC) and the dorsal lateral geniculate nucleus of the thalamus (dLGN), in the mouse and the tree shrew, a highly visual, diurnal species closely related to primates. Previous attempts to link molecular markers to subdivisions and connectivity of the dLGN have shown lack of conservation across species, thus preventing the systematic investigation of brain-wide interactions involved in vision. Leveraging recent single-cell and single-nucleus RNA sequencing studies, our results unravel a conserved molecular marker that shows spatial restriction in the dLGN and correlates with the location of connections from the SC in both the mouse and the tree shrew. We extend our findings by confirming the presence of this molecular marker in the human dLGN. These results provide a molecular definition and genetic access point for SC to dLGN connections in the mouse and tree shrew, enabling cell-type specific studies of the parallel processing of visual information.

Delta-like protein 1 (DLK1) is a transmembrane protein involved in the regulation of cellular differentiation and stem cell maintenance in several tissues, including the pituitary gland. Although DLK1 expression has been reported in the adult pituitary, its spatiotemporal distribution during mouse pituitary development remains incompletely characterized. The aim of this study was to analyse the distribution of DLK1 during embryonic and postnatal development of the mouse pituitary gland and to characterize its relationship with hormone-producing cell populations. Immunohistochemistry was performed in Swiss albino mice from embryonic day 9.5 (e9.5) to postnatal day 15 (p15). Double immunofluorescence was used at e18.5 and p15 to examine the association of DLK1 immunoreactivity with ACTH-, TSH-, GH-, FSH- and PRL-producing cells. DLK1 immunoreactivity was detected from the earliest stages of pituitary development in Rathkes pouch and the ventral diencephalon. During embryonic development, DLK1-ir cells were widely distributed throughout adenohypophyseal and neurohypophyseal primordia and subsequently became progressively regionalized within the anterior, intermediate and tuberal lobes, as well as in the median eminence and posterior lobe. Cells displaying overlapping immunoreactivity for DLK1 and all hormone-producing cell populations analysed were observed at late embryonic and postnatal stages. Semiquantitative analysis at p15 indicated that approximately 32% of adenohypophyseal cells were DLK1-immunoreactive. These findings provide a detailed description of the spatiotemporal distribution of DLK1 during mouse pituitary ontogeny and reveal its association with differentiating endocrine cell populations throughout pituitary development.

Despite major advances in the study of cerebellar neurogenesis, cerebellar angiogenesis during embryogenesis remains poorly described. Recent advances in tissue clearing, light-sheet microscopy, and artificial intelligence have increasingly enabled detailed 3D modelling of cerebellar vasculature at early developmental stages. Here, vascular networks in mouse embryos from E11 to birth (P0) were labelled with podocalyxin, SMA, and PECAM-1 antibodies together with the nuclear marker TO-PRO-3 iodide, cleared, imaged by light-sheet microscopy, and finally modelled and quantitatively analyzed using Imaris and VesselVio. Our mapping reveals that the three main paired cerebellar arteries--the superior (SCA), anterior inferior (AICA), and posterior inferior (PICA) cerebellar arteries--emerge sequentially between E11 and E13 and display significant topographical variability comparable to that observed in humans. Morphometric analysis demonstrates distinct developmental dynamics, with SCA growth proportional to cerebellar expansion, whereas the AICA and PICA exhibit accelerated extension during later embryonic stages. Interestingly, the PICA does not reach the cerebellum before birth, highlighting the question of its contribution to embryonic cerebellar vascularization. The intrinsic vascular network evolves from a rudimentary bilayer at E11 into a highly branched architecture organized around radial penetrating vessels, giving rise to collaterals that progressively colonized the cerebellar parenchyma during foliation and lobulation. These vascular changes temporally coincided with the successive stages of cerebellar neurogenesis, supporting an interplay between vascular and neuronal development. Together, our findings provide the first spatio-temporal three-dimensional atlas of cerebellar vascularization during mouse embryogenesis, establishing a reference framework for investigating cerebellar angiogenesis in developmental and pathological conditions. HighlightsO_LIThis work is the first 3D modelling of the cerebellar vasculature in mouse embryo. C_LIO_LISCA, AICA, PICA develop through distinct spatial and temporal growth programs. C_LIO_LIPICA does not contribute to cerebellar vascularization before birth. C_LIO_LIThe intra-cerebellar vascularization evolves at E11 from a simple vessel bilayer. C_LIO_LIBetween E13 and P0, radial vessels form collaterals colonizing cerebellum. C_LIO_LIThe vascular changes temporally coincided with cerebellar neurogenesis. C_LI

Valproic acid (VPA) is a widely used antiepileptic drug that also increases the risk of neurodevelopmental disorders in the offspring of exposed mothers. Prenatal exposure to VPA is a widely used rodent model of autism spectrum disorder (ASD). Anatomical, functional and molecular alterations in the retinas of various ASD model animals have been described in the literature, but the impact on the neural composition of the retina remains unclear. We examined whether and how the density and spatial regularity of selected retinal neurons are altered in the VPA induced model of ASD. Whole-mount retinas of 2-month-old VPA-treated and control animals were immunolabeled for S-cones, horizontal cells, AII amacrine cells, and parvalbumin-positive wide-field amacrines (PV-wfACs), and the positions of labelled cells mapped in various regions of interest (n = 39 for treated, n = 32 for control animals) across the retinas. Multivariate analysis of variance revealed a significant overall effect of VPA on cell densities (p = 6.1x10-7, 2 = 0.43), driven mainly by reduced AII amacrine density, while horizontal cells showed a modest reduction and S-cones were unaffected. After adjusting for retinal location, analysis of covariance indicated a 7% decrease in AII cells and a 15% increase in PV-wfACs. Regularity indices calculated from nearest neighbor distances or Voronoi-domain areas of cell mosaics were largely unchanged. These findings suggest that prenatal VPA exposure selectively alters inhibitory inner retinal circuitry in the rat ASD model at the time of cell differentiation, but self-organizing mechanisms responsible for spatial order are not affected. Lay SummaryValproic acid (VPA) is a medicine for epilepsy, but it can also raise the risk of autism in children when taken during pregnancy. In rats exposed to VPA before birth, we found changes in certain nerve cells of the retina: one type of cell important for night vision was reduced, while another type increased slightly, while most other cells stayed the same. This suggests that the changes in development that lead to autism may also be reflected in the structure and function of the eye.

The feline auditory cortex is understood to consist of 13 distinct subregions with unique anatomical and functional properties. Differential patterns of SMI-32 immunoreactivity are commonly used to identify the borders between these subregions; however, the detailed description of areal differences that is commonly cited did not include descriptions of the patterns observed along the posterior ectosylvian gyrus. Thus, the current manuscript aims to provide a more complete data set that can used to delineate the dorsal, intermediate, and ventral divisions of the posterior ectosylvian gyrus (auditory cortical regions dPE, iPE, and vPE, respectively) based on SMI-32 reactivity using the same methods and measures. Taken together, the current data and those published previously allow for a standardized approach to identifying all 13 auditory cortical subregions in this essential model of auditory cortical structure and function.

Dendritic spines are the principal postsynaptic sites of excitatory transmission. For over a century, their shape has been sorted into discrete categories such as filopodia, thin, long thin, stubby, mushroom, and branched, largely by Golgi-Cox impregnation and, more recently, confocal microscopy. However, both approaches share a fundamental limitation. The histological sectioning and single-viewpoint imaging that these methods rely on cannot control the orientation of a spine relative to the observer. Because a spine is a three-dimensional object, the projection seen depends on how its parent dendrite lies within the section. Here, using the publicly available H01 petavoxel reconstruction of human temporal cortex imaged by serial-section electron microscopy (EM), we show that spine-shape classification depends strongly on viewing angle. A total of 445 spines on layer 4 basal dendrites of five pyramidal neurons were classified from an initial viewpoint (Angle 1), then reclassified after rotation in Neuroglancer (Angle 2). Only 20.9% kept their category, so chance-corrected agreement was negligible (Cohens kappa = 0.027). These observations provide direct evidence that the rigid Golgi-Cox and confocal taxonomies conflate true spine morphology with the arbitrary angle of view. Our results, therefore, support recasting spine shape as a three-dimensional continuum, measurable in petavoxel reconstructions such as H01 through free rotation in Neuroglancer. Significance statementThe classification of dendritic spines into discrete shape classes underpins a vast literature on synaptic plasticity, development, and disease. Yet it rests on two-dimensional images whose viewing angle is not controlled. By rotating the same human spines in a nanoscale EM reconstruction, this study shows that four out of five spines change category with viewpoint alone. The finding exposes a systematic bias in Golgi-Cox and confocal classifications. It argues that spine morphology should be treated as a measurable three-dimensional continuum rather than a set of fixed labels.

The lateral habenula (LHb) shapes reward and aversion learning via projections to midbrain monoaminergic centers. Recent studies have demonstrated significant genetic, anatomical, and electrophysiological diversity within the LHb. However, it remains unclear how genetic or intrinsic electrophysiological characteristics relate to in vivo neuronal activity patterns. Additionally, there are few descriptions of transgenic mouse lines labeling specific LHb neuronal subtypes. Here we describe spatial gene expression patterns, electrophysiological characteristics, and projection targets for specific subpopulations of neurons in the LHb targeted via existing transgenic mouse lines. Furthermore, we demonstrate that two genetically defined subpopulations differentially respond to value, prediction errors, and directional movement during flexible, reward-guided behavior. These findings indicate that specific, genetically targetable, neuronal subpopulations in LHb may control discrete aspects of motivated behavior through parallel circuits targeting serotonergic and dopaminergic midbrain centers.

The origins and early diversification of intercellular signaling molecules in animals remain poorly understood because comparative data across basal metazoan lineages are limited. Cnidarians form the sister group to bilaterian animals, and characterizing their transmitter systems is critical to understanding how complex adaptations within integrative systems shape evolutionary trajectories. Although glutamate is a well-established transmitter in bilaterian animals, its role in cnidarians remains unclear, and information on its neuronal function and signaling is limited. For most studied cnidarians, glutamate has been suggested to be a non-neuronal signaling molecule. Here, using glutamate immunoreactivity (Glu IR) in eight hydrozoan species with distinct ecologies (Aequorea victoria, Eutonina indicans, Clytia gregaria, Bougainvillia principis, Euphysa flammea, Polyorchis penicillatus, Aglantha digitalis, Nanomia septata), we identified and visualized distinct populations of glutamate-immunoreactive (Glu-ir) cells, including nematocytes, neurons, and muscle cells. A broad diversity of Glu-ir nematocytes was found in all studied species. Glu-ir neural cells were found only in three species (Aequorea, Nanomia, and Aglantha); their morphology and localization were species-specific. In addition, some striated and smooth myoepithelial cells were found to be either Glu-ir or GABA-ir. We propose that both glutamatergic and GABAergic systems were independently recruited more than 3 times as neurotransmitters across cnidarians, and that these recruitments are fundamentally rooted in bioenergetic demands.

The subiculum (SUB) is a major hippocampal output hub that routes information to cortical and subcortical targets, and its long-range projections are considered excitatory. Using enhancer-driven adeno-associated viral vectors to selectively label {gamma}-aminobutyric acid (GABA)-releasing neurons across species, here we show that the dorsal SUB also sends an inhibitory projection to the dorsal part of the medial entorhinal cortex (MEC) in mice and rats. Anterograde tracing in mice revealed that the dorsal SUB contains GABAergic neurons that project sparsely to all layers of the dorsal MEC with enrichment in superficial layers, in contrast to the glutamatergic SUB axons targeting MEC layer V. Slice electrophysiology demonstrated that these GABAergic axons form inhibitory synapses in the MEC. A subset of projecting neurons expressed parvalbumin (PV), whereas somatostatin-positive neurons were rare. Consistently, PV neuron-specific anterograde tracing recapitulated the SUB-to-MEC projection. In rats, subicular GABAergic axons were enriched in MEC layer II, and SynaptoTAG2-labeled presynaptic boutons were positive for the vesicular GABA transporter, supporting inhibitory synapse formation. Anterograde tracing of PV neurons similarly recapitulated the laminar axonal distribution in the MEC. These results identify a conserved PV-associated inhibitory SUB-to-MEC projection with species-specific laminar organization, extending the canonical excitatory view of subicular output.

Glucagon is a key metabolic hormone regulating blood glucose and appetite, yet little is known about its actions within the brain. Here, we investigated its receptor (GCGR) localization in periventricular brain barrier interfaces in young rats using immunohistochemical and immunofluorescence approaches. GCGR was enriched in the proximal region of motile ependymal cilia lining the ventricles, as well as in tanycytic primary cilia and cytoplasmic extensions within the hypothalamus. Additional immunostaining was observed in ciliated cells of the subcommissural organ and, more heterogeneously, in choroid plexus epithelium and associated primary cilia, while other circumventricular organs lacked detectable GCGR. These findings identify brain cilia and tanycytes as previously unrecognized sites of glucagon receptor localization and suggest that glucagon signaling at brain barrier interfaces may contribute to integrating peripheral metabolic cues with central homeostatic circuits.

Tree shrews (Tupaia belangeri) are increasingly used in comparative neuroscience, yet their respiratory physiology remains poorly characterized. We quantified spontaneous breathing and respiratory rhythm variability in awake adult tree shrews (n = 10; 5 males, 5 females) using whole-body plethysmography. Respiratory frequency decreased by approximately 16% with acclimatization to the recording chamber, while respiratory timing, body-mass-normalized respiratory amplitude, inspiratory flow, and minute ventilation remained relatively stable. After acclimatization, mean respiratory parameters were similar between sexes, but short-term breath-to-breath variability (SD1) was greater in males than females, whereas SD2 was comparable. These findings establish baseline respiratory characteristics in awake tree shrews and identify sex-dependent differences in short-term respiratory rhythm stability.

Companion animal brain banking has been recognized as a valuable approach for translational aging and dementia research. However, realizing the full value of canine brain banks depends on optimizing the methods that are used to collect and preserve the tissue. Whole brain perfusion fixation is one promising approach, but it is not yet well described in dogs. Here we describe the development of methods for a canine brain bank (currently n = 55), including whole brain perfusion fixation via aortic cannulation and brain extraction. We assessed perfusion quality using gross examination, post-perfusion CT, and histological clearance of blood vessels. We found that body weight and average flow rate per body weight were each significantly correlated with perfusion quality in our cohort. To illustrate the kind of analysis the bank could facilitate, we next performed a preliminary study of brain aging, one of our primary planned research applications. Using a pixel classifier applied to whole slide images, we quantified lipofuscin burden, and in this preliminary cohort found that it increased strongly with age in both the thalamus and hippocampus. In the hippocampus, lipofuscin burden was also elevated in dogs with owner-reported cognitive dysfunction, although the current cohort is too small to determine to what extent this association is independent of age. Preliminary electron microscopy studies also confirmed that perfusion fixed tissue from the bank is amenable to ultrastructural analysis. This work describes one approach for canine brain perfusion fixation and introduces a brain tissue resource that may help support future neuroscience research.